PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0299600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 215aa    MW: 23076 Da    PI: 6.6224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0299600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-104989954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  ORGLA01G0299600.1 49 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 89
                       699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3134089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1445108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1246100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-144693No hitNo description
PfamPF000102.5E-74989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHDPRGFPIH PQPYHLHPTA GGLGEGRMRG GGRRRPGAKL STDPQSVAAR ERRHRISDRF  60
RVLRSLVPGG SKMDTVSMLE QAIHYVKFLK AQVTLHQAAL VQHEEGCQHA DVAAAFAAAD  120
ADLALELNHR HGGAGDDDAG MTTLEMAPMQ EAVGYGDGPA HQMMQQALDP AGQLMMGGAH  180
QLPPLPCCVF VQETDPSCYS VCNVHGEESG AQGSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618581.11e-157PREDICTED: transcription factor LAX PANICLE
SwissprotQ7XAQ61e-159LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLA0A0D3EVU51e-157A0A0D3EVU5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YGU41e-157A0A0D9YGU4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FVB21e-157A0A0E0FVB2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4I11e-157A0A0E0N4I1_ORYRU; Uncharacterized protein
TrEMBLI1Q5W91e-157I1Q5W9_ORYGL; Uncharacterized protein
STRINGORGLA01G0299600.11e-157(Oryza glaberrima)
STRINGORGLA06G0253200.11e-157(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-26APRATAXIN-like